PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0116s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 310aa    MW: 34155.3 Da    PI: 9.6565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0116s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-18107157256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  Kalax.0116s0018.1.p 107 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 157
                          59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-15106166No hitNo description
SuperFamilySSF541713.07E-22107164IPR016177DNA-binding domain
SMARTSM003803.6E-36107170IPR001471AP2/ERF domain
PROSITE profilePS5103223.235107164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-31107165IPR001471AP2/ERF domain
PRINTSPR003675.1E-10108119IPR001471AP2/ERF domain
PfamPF008471.2E-12108157IPR001471AP2/ERF domain
PRINTSPR003675.1E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEQQNPPFTA IDSNNIIGST LSQLLLAGAS GIDSIFSHCS PSTSFSGQTL EPLGTSVYLR  60
QRELVQKFAE ENRATLDFRR TVQHQIDLRS SMYAANMASV SLGKKKLYRG VRQRHWGKWV  120
AEIRLPQNRM RVWLGTYETA EAAAYAYDRA AYKLRGEYAR LNFPNLKDPS SALGLDGSRL  180
SALKSSVDAK IQAICQKVKR EKANKLAKKK KNSASTTSVH LSAEKSESPS SYSSVSQPVQ  240
VSESWGTETV SPTVSEDGFW NGKSSSQQQA IWSPDGSITR TADGLDYDGY SLARIPSFDP  300
ELIWEVLAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20103164163ATERF1
3gcc_A5e-20103164163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439361.11e-95hypothetical protein CICLE_v10021265mg
SwissprotQ9C7W21e-72ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLV4TRS12e-95V4TRS1_9R
STRINGPOPTR_0003s13910.14e-88(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-64ERF family protein